Software/Tools Developed [Back]

1. Gen2EpiGUI: A user-friendly interface for the whole-genome sequencing pipeline, named Gen2Epi.
   Availability: https://github.com/ReemaSingh/Gen2EpiGUI
   Year: 2019
   

2. Gen2Epi: An automated whole-genome sequencing pipeline for linking full genomes to antimicrobial susceptibility and epidemiological data in Neisseria gonorrhoeae.**
   Availability: https://github.com/ReemaSingh/Gen2Epi
   Year: 2018

3. HTDA (High Throughput Data Analysis): A generic R/Bioconductor platform for the analysis of high throughput transcriptomics, proteomics, and
   metabolomics data.
   Availability: https://r-forge.r-project.org/projects/htda/
   Year: 2013

Data Curation,Deposition and Management

1. Description: Manually curated and deposited >200 nucleotide and protein sequences from 6 Dictyostelia genomes at NCBI nucleotide and protein database.
   Species: Dictyostelium polycarpum, D. polycephalum, D. deminutivum, Polysphondylium violaceum, Acytostelium ellipticum, and A. leptosomum.
   Accessions : KX274471- KX274476, KX539312 - KX539509.
   Year: 2016
   

2. Description: Nucleotide and protein sequences for two Neisseria gonorrhoeae ß-lactamase producing plasmids pJRD20 and pJD5 deposited at NCBI.
   Accessions: MH140434 and MH140435
   Year: 2018
   

3. Description:Nucleotide and protein sequences for three Neisseria gonorrhoeae cloning vectors deposited at NCBI.
   Accessions: OM801976, OM801977 and OM801978
   Year: 2022